International Workshop on

Applications of Machine Learning in Bioinformatics

of

2009 IEEE International Conference on Bioinformatics and Biomedicine

(IEEE BIBM 2009)

 

http://www.ittc.ku.edu/bioinformatics/BIBM09/home.php

 

November 1 - 4, 2009, Washington D.C., USA

 

Machine Learning techniques play an important role in Bioinformatics. As the accomplishment of human genome, techniques that can analyze large amount of data become urgent. Advances in Machine Learning and related techniques have played significant role in this task. This workshop aims to bring together researchers with expertise in machine learning, bioinformatics, and computational biology and provide a platform to the researchers to discuss recent advancements in the area of application of machine learning methods in field of bioinformatics.

 

Topics of interest include but not limited to:

 

- Sequence alignment

- Structural motif discovery

- Phylogenetics

- Primary genomic sequence

- Large-scale microarray gene expression data analysis

- Protein structure prediction

- Protein interaction network

- Protein-protein interface

- Biomarker discovery

- Management of genomics and proteomics data

- De novo peptide sequencing and spectral alignment

 

IMPORTANT DATES:

 

Full workshop papers submission due: August 10, 2009

Notification of acceptance: September 10, 2009

Camera-ready of accepted papers: October 1, 2007

The BIBM Conference: November 1 - 4, 2009

 

Program Chairs:

 

- Chair: Chunmei Liu, Howard University, chunmei@scs.howard.edu

- Co-Chair: Yinglei Song, University of Maryland, ysong@umes.edu

 

Program Committee Members:

Workshop Program:

(Nov. 1, 2009, Sunday, 10:15-1:15am, and 5:30pm-7pm; Hotel: Hyatt Conference room: Diplomat/Ambassador Room)

 

 

 Time  Paper Title  Authors
10:15am-10:35am Clustering Microarray Time-series Data using Expectation Maximization and Multiple Profile Alignment Numanul Subhani, Luis Rueda, Alioune Ngom, and Conrad J. Burdeny
10:35am-10:55am A Comparison of Data Mining Approaches in the Categorization of Oral Anticoagulation Patients

Francesco Archetti, Ilaria Giordani, Enza Messina, Giulia Ogliari, and Daniela Mari

10:55am-11:15am

Evaluation of Weight Matrix Models in the Splice Junction Recognition Problem

Leonardo G. Tavares, Heitor S. Lopes, and Carlos R. Erig Lima
11:15am-11:35am Relational Clustering and Bayesian Networks for Linking Gene Expression Profiles and Drug Activity Patterns E. Fersini, I. Giordani, E. Messina, and F. Archetti
11:35am-11:55am A Ground Truth Based Comparative Study on Detecting Epistatic SNPs

Li Chen, Guoqiang Yu, David J. Miller, Lei Song, Carl Langefeld, David Herrington,

       Yongmei Liu, and Yue Wang
11:55am-12:15pm

A New Distance Distribution Paradigm to Detect the Variability of the Influenza-A Virus in High Dimensional Spaces

Mosaab Daoud, Stefan C. Kremer
12:15pm-12:35pm CGM: A Biomedical Text Categorization Approach Using Concept Graph Mining Said Bleik, Min Song, Aaron Smalter, Jun Huan, and Gerald Lushington
12:35pm-12:55pm On a General Method for Matrix Factorisation Applied to Supervised Classification Vladimir Nikulin, Geoffrey J. McLachlan
12:55pm- 1:15pm Domain Content Based Protein Function Prediction Using Incomplete GO Annotation Information Lirong Tan, Zhiwen Yu, and Hau-San Wong
 5:30pm-5:50pm

Selection of Negative Examples in Learning Gene Regulatory Networks

Michele Ceccarelli, Luigi Cerulo
 5:50pm-6:10pm

A Novel Graph-based Selection Wrapper for Learning Enhancement in a Semi-supervised Manner

Zhenggang Chang, Jieyue He, Wei Zhongy, and Yi Panz
 6:10pm-6:30pm

A Graph Algorithm for Extracting Features from Transcription Factor Binding Sites

Chunmei Liu, Yinglei Song, Junfeng Qu, and Anietie U. Andy
 6:30pm-6:50pm Learning Parameters for Non-coding RNA Sequence-Structure Alignment Yinglei Song, Chunmei Liu, and Junfeng Qu